Professor Jonathan R Leake
School of Biosciences
Professor of Plant-Soil Interactions
+44 114 222 0055
Full contact details
School of Biosciences
C53
Alfred Denny Building
Western Bank
葫芦影业
S10 2TN
- Profile
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- BSc (1984) University of Bristol
- PhD (1988) University of 葫芦影业
- NERC Postdoctoral Research Assistant, Animal and Plant Sciences, University of 葫芦影业 (1988-1990)
- Temporary Lecturer, Animal and Plant Sciences, University of 葫芦影业 (1990)
- Lecturer, Animal and Plant Sciences, University of 葫芦影业 (1990-2003)
- Senior Lecturer, Animal and Plant Sciences, University of 葫芦影业 (2003-2006)
- Reader in Plant-Soil interactions, School of Biosciences, University of 葫芦影业 (2007-present)
- Research interests
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- Plant-to-soil carbon fluxes - Quantitative analysis of carbon fluxes from plants to soil in grasslands and forests, and the storage of carbon in soils and vegetation. Development of methods for carbon budgeting in urban greenspace and its potential contribution to sustainable urban environments.
- Mycorrhizal fungi- their networks of power and influence - from nano-to-global scales - Use carbon isotope tracers to quantify energy passing from plants to their symbiotic root-infecting mycorrhizal fungi and how it is used by these fungi: (i) To drive mineral weathering, (ii) in nutrient and carbon cycling and (iii) to empower interactions with other soil organisms (fungi, plants, and fungal-feeding collembolans).
- Myco-heterotrophy: plants parasitic on fungi - 葫芦影业 10% of all plant species are myco-heterotrophic for part of their life, including most orchids. Over 400 species are fully myco-heterotrophic. My interests are in understanding their evolution, adaptive features, life-cycles, ecology, physiology, functioning and their critical fungal partners.
- Specialised root functioning - Root adaptations as an alternative strategy to mycorrhiza- spatial and temporal foraging precision and uptake of phosphorus by dauciform roots in sedges.
- Pollution impacts on plants, soil biology and chemistry, and health - Impacts of long-term nitrogen pollution on grassland soil and plant ecology, and recovery following reduced pollution inputs. Health risks and benefits associated with urban food production. Effects of urban greenspace and soils in trapping and sequestering black carbon.
- Publications
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Show: Featured publications All publications
Featured publications
Journal articles
- . The ISME Journal, 10(6), 1514-1526.
- . New Phytologist, 205(4), 1492-1502.
- . New Phytologist, 205(2), 743-756.
- . Journal of Applied Ecology.
- . Biology Letters, 10(7), 20140375-20140375.
- . Sci Total Environ, 472, 444-453.
- . Biogeosciences, 11(2), 321-331.
- . Mycologist, 19(3), 113-122.
- . Curr Opin Plant Biol, 7(4), 422-428.
- Novel in-growth core system enables functional studies of grassland mycorrhizal mycelial networks. NEW PHYTOL, 152(3), 555-562.
- THE BIOLOGY OF MYCO-HETEROTROPHIC (SAPROPHYTIC) PLANTS. NEW PHYTOL, 127(2), 171-216.
All publications
Journal articles
- . Environmental Research: Food Systems, 1(2), 025007-025007.
- . Agriculture, Ecosystems & Environment, 367, 108991-108991.
- . New Phytologist.
- . Agriculture, Ecosystems & Environment, 365, 108928-108928.
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- . Global Change Biology, 30(1).
- . The International Journal of Life Cycle Assessment.
- . Frontiers in Plant Science, 13.
- . Science of The Total Environment, 158358-158358.
- . Frontiers of Agricultural Science and Engineering, 9(2), 245-271.
- . Nutrition Bulletin, 46(4), 497-505.
- . Science of the Total Environment, 789.
- . Soil and Tillage Research, 212.
- . Applied Geochemistry, 105023-105023.
- . Proceedings of the National Academy of Sciences, 118(11), e2022241118-e2022241118.
- . Mycorrhiza.
- . Science of The Total Environment, 713.
- . Nature Plants, 6(4), 349-354.
- . Scientific Reports, 10(1).
- . Nature Food, 1, 155-159.
- . Science of The Total Environment, 705.
- . Current Biology, 30(3), 421-431.e2.
- . The Science of The Total Environment, 667, 179-190.
- . New Phytologist.
- . Agriculture, Ecosystems and Environment, 273, 1-12.
- . Plants, People, Plant.
- . Geoderma, 334, 113-123.
- . Nature Plants, 4(6), 392-392.
- . Nature Plants, 4, 138-147.
- . Proceedings of the Royal Society B: Biological Sciences, 284(1860).
- . Scientific Reports, 6.
- . The ISME Journal, 10(6), 1514-1526.
- . Applied Energy, 164, 871-881.
- . Journal of Applied Ecology, 52(5), 1237-1245.
- . Palaeontology, 58(5), 787-801.
- . Plant, Cell & Environment, 38(9), 1947-1961.
- . Proceedings of the Royal Society B: Biological Sciences, 282(1813).
- . Scientific Reports, 5, 12187-12187.
- . Environmental Science & Technology, 49(14), 8339-8346.
- . Nature Communications, 6(1).
- . New Phytologist, 205(4), 1492-1502.
- . Frontiers in Ecology and the Environment, 13(5), 241-241.
- . New Phytologist, 205(2), 743-756.
- . Journal of Applied Ecology.
- . Biology Letters, 10(7), 20140375-20140375.
- . Ecosystems.
- . Sci Total Environ, 472, 444-453.
- . Botany, 92(1), 83-83.
- . PLoS One, 9(7), e101872.
- . Biogeosciences, 11(2), 321-331.
- Identifying potential sources of variability between vegetation carbon storage estimates for urban areas.. Environmental pollution (Barking, Essex : 1987), 183, 133-142.
- . Geomicrobiology Journal, 30(8), 721-730.
- . Am J Bot, 100(3), 582-591.
- . Environmental Pollution, 183, 133-142.
- . Sci Rep, 2, 963.
- . Mol Ecol, 21(20), 4921-4924.
- . Biol Lett, 8(6), 1006-1011.
- . Geobiology, 10(5), 445-456.
- . Philos Trans R Soc Lond B Biol Sci, 367(1588), 565-582.
- . Plant and Soil, 1-10.
- . Journal of Geophysical Research: Biogeosciences, 117(3).
- . Nat Commun, 3, 835.
- . Journal of Ecology, 100(1), 31-41.
- . Biogeochemistry, 111(1-3), 411-425.
- . Geochimica et Cosmochimica Acta, 75(22), 6870-6881.
- . American Journal of Science, 311, 369-403.
- . Biol Lett, 7(5), 771-774.
- . Geobiology, 9(2), 140-165.
- Impacts of atmospheric nitrogen deposition: Responses of multiple plant and soil parameters across contrasting ecosystems in long-term field experiments. Global Change Biology.
- . Proceedings of the Institution of Civil Engineers: Urban Design and Planning, 164(2), 121-128.
- . Global Change Biology, 17(8), 2615-2628.
- . Journal of Applied Ecology, 48(5), 1125-1134.
- Recovery of soil nitrogen pools in species-rich grasslands after 12 years of simulated pollutant nitrogen deposition: A 6-year experimental analysis. Global Change Biology.
- Plant and mycorrhizal driven silicate weathering: Quantifying carbon flux and mineral weathering processes at the laboratory mesocosm scale. Applied Geochemistry.
- . Nat Commun, 1, 103.
- Physiological ecology of mycoheterotrophy. NEW PHYTOL, 185(3), 601-605.
- . GEOLOGY, 37(7), 615-618.
- . Geobiology, 7(2), 171-191.
- . Environ Health, 8 Suppl 1, S6.
- . Environ Pollut, 155(2), 336-349.
- . MINERALOGICAL MAGAZINE, 72(1), 85-89.
- . New Phytol, 180(1), 176-184.
- . New Phytol, 180(4), 864-874.
- . New Phytol, 177(3), 572-576.
- . Ann Bot, 99(5), 831-834.
- . Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology, 146(4), S222-S222.
- . APPL SOIL ECOL, 33(2), 152-175.
- . New Phytol, 171(2), 405-416.
- . SCIENCE, 309(5737), 1047-1047.
- . CAN J BOT, 83(8), 1073-1073.
- . PLANT SOIL, 271(1-2), 157-164.
- . Water, Air, & Soil Pollution: Focus, 4(6), 159-167.
- . Mycologist, 19(3), 113-122.
- . NEW PHYTOL, 163(2), 405-423.
- . Curr Opin Plant Biol, 7(4), 422-428.
- . NEW PHYTOL, 161(2), 503-515.
- . Mycorrhiza, 14(1), 37-45.
- . Water, Air, and Soil Pollution: Focus, 4(6), 159-167.
- . NEW PHYTOL, 161(1), 279-289.
- . EUR J SOIL SCI, 54(4), 671-677.
- Effects of enhanced nitrogen deposition and phosphorus limitation on nitrogen budgets of semi-natural grasslands. GLOBAL CHANGE BIOL, 9(9), 1309-1321.
- Transfer of recent photosynthate into mycorrhizal mycelium of an upland grassland: short-term respiratory losses and accumulation of C-14. SOIL BIOL BIOCHEM, 34(10), 1521-1524.
- . NATURE, 419(6905), 389-392.
- Symbiotic germination and development of the myco-heterotrophic orchid Neottia nidus-avis in nature and its requirement for locally distributed Sebacina spp.. NEW PHYTOL, 154(1), 233-247.
- In situ (CO2)-C-13 pulse-labelling of upland grassland demonstrates a rapid pathway of carbon flux from arbuscular mycorrhizal mycelia to the soil. NEW PHYTOL, 153(2), 327-334.
- Novel in-growth core system enables functional studies of grassland mycorrhizal mycelial networks. NEW PHYTOL, 152(3), 555-562.
- Assessment of Zn mobilization in the rhizosphere of Thlaspi caerulescens by bioassay with non-accumulator plants and soil extraction. PLANT SOIL, 237(1), 147-156.
- Is diversity of ectomycorrhizal fungi important for ecosystem function?. NEW PHYTOL, 152(1), 1-3.
- Zinc accumulation by Thlaspi caerulescens from soils with different Zn availability: a pot study. PLANT SOIL, 236(1), 11-18.
- Assimilation and isotopic fractionation of nitrogen by mycorrhizal fungi. NEW PHYTOL, 151(2), 503-511.
- Assimilation and isotopic fractionation of nitrogen by mycorrhizal and nonmycorrhizal subarctic plants. NEW PHYTOL, 151(2), 513-524.
- . Environ Sci Technol, 35(15), 3237-3241.
- . Tree Physiol, 21(2-3), 71-82.
- Symbiotic germination and development of myco-heterotrophic plants in nature: transfer of carbon from ectomycorrhizal Salix repens and Betula pendula to the orchid Corallorhiza trifida through shared hyphal connections. NEW PHYTOL, 145(3), 539-548.
- Symbiotic germination and development of myco-heterotrophic plants in nature: ontogeny of Corallorhiza trifida and characterization of its mycorrhizal fungi. NEW PHYTOL, 145(3), 523-537.
- Positive responses to Zn and Cd by roots of the Zn and Cd hyperaccumulator Thlaspi caerulescens. NEW PHYTOL, 145(2), 199-210.
- Temperature regulation of extracellular proteases in ectomycorrhizal fungi (Hebeloma spp.) grown in axenic culture. MYCOL RES, 103, 707-714.
- The effects of quantity and duration of simulated pollutant nitrogen deposition on root-surface phosphatase activities in calcareous and acid grasslands: a bioassay approach. NEW PHYTOL, 141(3), 433-442.
- Changes in soil microbial biomass and microbial activities in response to 7 years simulated pollutant nitrogen deposition on a heathland and two grasslands. ENVIRON POLLUT, 103(2-3), 239-250.
- Phosphodiesters as mycorrhizal P sources .2. Ericoid mycorrhiza and the utilization of nuclei as a phosphorus and nitrogen source by Vaccinium macrocarpon. NEW PHYTOL, 132(3), 445-451.
- Phosphodiesters as mycorrhizal P sources .1. Phosphodiesterase production and the utilization of DNA as a phosphorus source by the ericoid mycorrhizal fungus Hymenoscyphus ericae. NEW PHYTOL, 132(3), 435-443.
- THE BIOLOGY OF MYCO-HETEROTROPHIC (SAPROPHYTIC) PLANTS. NEW PHYTOL, 127(2), 171-216.
- PROTEINASE ACTIVITY IN MYCORRHIZAL FUNGI .3. EFFECTS OF PROTEIN, PROTEIN HYDROLYSATE, GLUCOSE AND AMMONIUM ON PRODUCTION OF EXTRACELLULAR PROTEINASE BY HYMENOSCYPHUS-ERICAE (READ) KORF AND KERNAN. NEW PHYTOL, 117(2), 309-317.
- EXPERIMENTS WITH ERICOID MYCORRHIZA. METHOD MICROBIOL, 23, 435-459.
- CHITIN AS A NITROGEN-SOURCE FOR MYCORRHIZAL FUNGI. MYCOL RES, 94, 993-995.
- PROTEINASE ACTIVITY IN MYCORRHIZAL FUNGI .2. THE EFFECTS OF MINERAL AND ORGANIC NITROGEN-SOURCES ON INDUCTION OF EXTRACELLULAR PROTEINASE IN HYMENOSCYPHUS-ERICAE (READ) KORF AND KERNAN. NEW PHYTOL, 116(1), 123-128.
- THE BIOLOGY OF MYCORRHIZA IN THE ERICACEAE .17. THE ROLE OF MYCORRHIZAL INFECTION IN THE REGULATION OF IRON UPTAKE BY ERICACEOUS PLANTS. NEW PHYTOL, 115(2), 251-258.
- PROTEINASE ACTIVITY IN MYCORRHIZAL FUNGI .1. THE EFFECT OF EXTRACELLULAR PH ON THE PRODUCTION AND ACTIVITY OF PROTEINASE BY ERICOID ENDOPHYTES FROM SOILS OF CONTRASTED PH. NEW PHYTOL, 115(2), 243-250.
- THE BIOLOGY OF MYCORRHIZA IN THE ERICACEAE .16. MYCORRHIZA AND IRON UPTAKE IN CALLUNA-VULGARIS (L) HULL IN THE PRESENCE OF 2 CALCIUM SALTS. NEW PHYTOL, 114(4), 651-657.
- THE BIOLOGY OF MYCORRHIZA IN THE ERICACEAE .15. THE EFFECT OF MYCORRHIZAL INFECTION ON CALCIUM-UPTAKE BY CALLUNA-VULGARIS (L) HULL. NEW PHYTOL, 113(4), 535-544.
- THE BIOLOGY OF MYCORRHIZA IN THE ERICACEAE .13. SOME CHARACTERISTICS OF THE EXTRACELLULAR PROTEINASE ACTIVITY OF THE ERICOID ENDOPHYTE HYMENOSCYPHUS-ERICAE. NEW PHYTOL, 112(1), 69-76.
- . Nature Geoscience.
- . Soil Use and Management.
- . Phycology, 2(3), 297-318.
- . Soil Use and Management.
- . Biogeosciences Discussions, 10(10), 15779-15807.
- . Global Change Biology.
Chapters
- , Mycorrhizal Mediation of Soil (pp. xi-xii). Elsevier
- , Mycorrhizal Mediation of Soil (pp. 9-33). Elsevier
- Modelling Short-Rotation Coppice and Tree Planting for Urban Carbon Management-A Citywide Analysis, Urban Forests: Ecosystem Services and Management (pp. 37-58).
- , Urban Horticulture: Ecology, Landscape, and Agriculture (pp. 55-78).
- , Acta medicinae legalis et socialis (pp. 311-317). Imprensa da Universidade de Coimbra
- , Methods in Comparative Plant Ecology (pp. 29-222). Springer Netherlands
- , Fungi in the Environment (pp. 161-184). Cambridge University Press
- , Fungi in Biogeochemical Cycles (pp. 129-150). Cambridge University Press
Conference proceedings papers
- Constraining global-scale weathering models through nano-scale ectomycorrhiza-mineral interactions. GEOCHIMICA ET COSMOCHIMICA ACTA, Vol. 74(12) (pp A123-A123)
- Paxillus involutus hyphae: Imaging their structure and interaction with mineral surfaces using AFM. GEOCHIMICA ET COSMOCHIMICA ACTA, Vol. 73(13) (pp A1140-A1140)
- Effects of mineral type and grain size on EM fungal-mineral interactions. GEOCHIMICA ET COSMOCHIMICA ACTA, Vol. 73(13) (pp A315-A315)
- Hydroxyapatite weathering by pine mycorrhizas-The role of oxalic acid. GEOCHIMICA ET COSMOCHIMICA ACTA, Vol. 73(13) (pp A732-A732)
- Arbuscular mycorrhiza: Mineral-specific fungal interactions. GEOCHIMICA ET COSMOCHIMICA ACTA, Vol. 73(13) (pp A1065-A1065)
- Nanoscale imaging of ectomycorrhizal weathering processes on minerals. GEOCHIMICA ET COSMOCHIMICA ACTA, Vol. 73(13) (pp A421-A421)
- Mineralogy controls oxalic acid release in mycorrhiza weathering. GEOCHIMICA ET COSMOCHIMICA ACTA, Vol. 73(13) (pp A1177-A1177)
- Mycorrhizal evolution, biological weathering and the long-term carbon cycle. GEOCHIMICA ET COSMOCHIMICA ACTA, Vol. 73(13) (pp A1318-A1318)
- Modelling the impact of biota and increasing atmospheric CO2 on silicate mineral weathering processes. GEOCHIMICA ET COSMOCHIMICA ACTA, Vol. 73(13) (pp A84-A84)
- Quantifying chemical weathering at the biotite-mycorrhiza interface. GEOCHIMICA ET COSMOCHIMICA ACTA, Vol. 73(13) (pp A138-A138)
- . MINERALOGICAL MAGAZINE, Vol. 72(1) (pp 131-134)
- . MINERALOGICAL MAGAZINE, Vol. 72(1) (pp 115-120)
- Biologically-mediated weathering of minerals from nanometre scale to environmental systems. GEOCHIMICA ET COSMOCHIMICA ACTA, Vol. 71(15) (pp A125-A125)
- . CANADIAN JOURNAL OF BOTANY-REVUE CANADIENNE DE BOTANIQUE, Vol. 82(8) (pp 1016-1045)
- . CANADIAN JOURNAL OF BOTANY-REVUE CANADIENNE DE BOTANIQUE, Vol. 82(8) (pp 1243-1263)
- THE ROLE OF ERICOID MYCORRHIZAS IN THE ECOLOGY OF ERICACEOUS PLANTS. AGRICULTURE ECOSYSTEMS & ENVIRONMENT, Vol. 29(1-4) (pp 237-250)
- THE EFFECTS OF PHENOLIC-COMPOUNDS ON NITROGEN MOBILIZATION BY ERICOID MYCORRHIZAL SYSTEMS. AGRICULTURE ECOSYSTEMS & ENVIRONMENT, Vol. 29(1-4) (pp 225-236)
Preprints
- Research group
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Research links and collaborations
- Prof. Sir David Read FRS - University of 葫芦影业, UK
- Dr. Duncan Cameron - University of 葫芦影业, UK
- Prof. David Beerling - University of 葫芦影业, UK
- Prof Margaret Bell and Dr Anil Namdeo - University of Newcastle, UK
- Prof. Kevin Gaston - University of Exeter, UK
- Prof. Kevin Lomas - University of Loughborough, UK
- Prof. Mike Burrell - University of 葫芦影业, UK
- Prof. Steven Banwart - University of 葫芦影业, UK
- Prof. Vala Ragnarsdottir - University of Reykjavik, Iceland
- Prof. Lianne Benning - University of Leeds, UK
- Dr Terry McMaster - University of Bristol, UK
- Dr. Martin I Bidartondo - Imperial College and Kew Gardens, UK
Postdoctoral research fellows
- Dr Jill Edmondson - Measurement, Mapping, Modelling, Management (4M): An evidence-based methodology for understanding and shrinking the urban carbon footprint. Quantifying the urban soil and vegetation carbon pools within the city of Leicester (EPSRC SUE2 consortium grant jointly with Prof KJ Gaston).
Research students
- Kirsty Elliott
- Owen Hayman (co-supervised with Professor DJ Beerling)
- Joseph Llanos (co-supervised with Professor P Warren)
- Magdalena Matysek (co-supervised with Dr D Childs)
Research technicians
- Irene Johnson - Research group technician maintaining laboratory fungal culture collection and coordinating mycorrhizal syntheses and isotope tracer studies. Deputy radiation protection officer. Departmental core funding.
- Adele Duran - Biologically-Mediated Weathering of Minerals from Nanometre Scale to Environmental Systems. Funding NERC and WUN Weathering Science Consortium.
- Dr David A Johnson - NERC grant jointly with Dr Gareth Phoenix and Dr Duncan Cameron.
- Stefanie Tille - Functional and evolutionary significance of symbiotic fungal associations in lower land plants (NERC-funded project with Prof DJ Beerling and Dr DD Cameron).
- Teaching activities
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I am tutor for the Biology with a Year Abroad degrees, and member of the Departmental Teaching Committee. My teaching interests are in interdisciplinary science spanning between biology and the environment with particular focus on biogeochemical cycles of carbon nitrogen and phosphorus, plant-soil interactions, Earth-surface processes driven by plants and microorganisms, biodiversity and ecosystem functioning, human impacts on terrestrial ecosystems and sustainability.
At Level 2 I teach and coordinate APS255 (Environmental Interpretation Field Course) which is an interdisciplinary residential field course based at the edge of the Connemara region of Western Ireland. The course involves in-depth study of habitats, landscape-shaping processes and human impacts on natural ecosystems, providing wide-ranging training in methods for field description, sampling, quantification and interpretation of ecosystems and the environment.
At Level 3 I coordinate and teach two modules:
- APS346 (Sustainable Agro-Ecosystems) reviews the current threats to sustainable food production and natural ecosystems caused by intensive agriculture and unsustainable exploitation of natural resources. A major focus is on the foundational role of soils in providing the underpinning support to terrestrial ecosystems and agriculture, and the way soils have been abused and damaged by human actions.
- APS332 (Issues in Environmental Science) is a seminar and discussion-group based module that considers human impacts upon the environment and the sustainability of the planet, combining reviews of scientific evidence with public and professional opinions and attitudes.
I supervise Level 3 Projects (APS330) in a wide range of subjects concerning plant-environment interactions, nutrient cycling and biogeochemistry, and Level 3 Dissertations (APS331) in topics relating to symbiosis, food security, sustainability, urban ecology, and agro-ecosystem functioning.
I have supervised Level 4 MBiolSci and MRes students on projects involving plant root adaptations, host genotype variation in mycorrhiza functioning and soil carbon sequestration.
- Professional activities and memberships
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- Advisor to the Editors of the New Phytologist (1997-present)
- Editorial board of Mycological Research (1999-2003)
- British Ecological Society Policy Advisory Group on Climate Change (2007-present)
- Phosphorus in Forest Ecosystems. Deutsche Forschungsgemeinschaft, Workshop Berlin 17-18 June 2010.
- Soil Phosphorus. Australian Research Council-New Zealand Network for Vegetation Function, Working Group 64, Perth, Western Austalia, December 2009.
- National Science Foundation USA - Workshop: Frontiers in Exploration of the Critical Zone II: Biological Aspects of Weathering, Washington DC, October 2009.
- External examiner for PhD candidates at University College Dublin, 2010; Imperial College, London 2009; University of Nottingham, 2009; University College Dublin, 2008; Manchester Metropolitan University 2007; The University of Lund, Sweden 2004; The University of York, UK 2002; The University of Western Sydney Australia, 2000; and The University of Durham, 1997.
Invited lectures
- Colonization of the terrestrial environment. 25th New Phytologist/Colston Research Society Symposium, Bristol, UK 2010
- Goldschmidt 2009, Davos, Switzerland
- Opening Plenary at Geochemistry of Earths麓s Surface, London, 2008
- Keynote lecture: British Mycological Society Annual Conservation and Taxonomy Meeting in partnership with the Royal Botanic Gardens, Kew, 2006
- Keynote lecture on Ericoid mycorrhizas and carbon cycling, International meeting on roots, mycorrhizas and their external mycelia in carbon dynamics in forest soil, Rovaniemi, Finland, 2006
- British Mycological Society Meeting, Fungi in the Environment, University of Nottingham, UK, 2004
- Opening Plenary at the fourth International Symposium on Mycorrhiza, Montreal, Canada, 2003