Dr Roy Chaudhuri
School of Biosciences
Lecturer in Bioinformatics
r.chaudhuri@sheffield.ac.uk
+44 114 222 2837
+44 114 222 2837
Firth Court
Full contact details
Dr Roy Chaudhuri
School of Biosciences
Firth Court
Western Bank
ºù«Ӱҵ
S10 2TN
School of Biosciences
Firth Court
Western Bank
ºù«Ӱҵ
S10 2TN
- Research interests
-
My research interests are primarily in the area of bacterial genomics.
Current research topics include:
- Comparative genomics and phylogenetics of bacterial pathogens, particularly E. coli and Salmonella
- Use of transposon insertion sequencing methods (TraDIS/TnSeq/HITS/InSeq) to identify essential bacterial genes and genes important for survival in particular environments such as during infection of a model system
- Development of user-friendly software tools and online resources for exploring data from -omics technologies. Examples include coliBASE, Xbase and the recently-funded .
- Publications
-
Show: Featured publications All publications
Featured publications
Journal articles
- . Infection and Immunity, 84(4), 989-997.
- . Nature Communications, 6(1).
- . BMC Genomics, 15(1), 1179-1179.
- . Vet Microbiol, 166(3-4), 558-566.
- . J Bacteriol, 195(18), 4264-4273.
- . PLoS Genet, 9(4), e1003456.
- . Infect Genet Evol, 12(2), 214-226.
- . Microbiology, 157(Pt 10), 2922-2932.
- . Journal of Bacteriology, 193(7), 1771-1776.
- . J Bacteriol, 192(21), 5822-5831.
- . PLoS One, 5(1), e8801.
- . BMC Genomics, 10, 291.
- . PLoS Pathogens, 5(7).
- . Journal of Bacteriology, 190(20), 6881-6893.
- . Nucleic Acids Res, 34(Database issue), D335-D337.
- . Nucleic Acids Research, 34(1), 1-9.
All publications
Journal articles
- . PLOS Biology, 22(8).
- . Microbial Genomics, 10(8).
- . Protein Science, 32(11).
- . PLOS Pathogens, 19(6).
- . mSphere, 8(1).
- .
- . Microbiology, 167(12).
- . Animal Diseases, 1(1).
- . Bioinformatics.
- . PeerJ, 9.
- . mSphere, 5(4).
- . PLoS ONE, 15(1).
- . Microbiology Resource Announcements, 9(1).
- . Nature Communications, 10(1).
- . PLOS Pathogens, 15(9).
- . Microbiology Resource Announcements, 8(30).
- . mSystems, 4(4).
- . Access Microbiology, 1(1A).
- . PLoS Biology, 17(1).
- . BMC Genomics, 20.
- . Infection and Immunity, 86(3).
- . Journal of Clinical Microbiology, 55(9), 2617-2628.
- . Microbial Genomics, 3.
- . Frontiers in Microbiology, 8.
- . Genome Announcements, 4(6).
- . Veterinary Record, 179, 276-276.
- . Frontiers in Microbiology, 7:810.
- . Journal of Bacteriology, 198(9), 1393-1400.
- . The ISME Journal, 10, 2468-2477.
- . Infection and Immunity, 84(4), 989-997.
- . Genome Announcements, 4(1), e01667-15-e01667-15.
- . Proceedings of the National Academy of Sciences, 112(51), 15725-15730.
- . Journal of Clinical Microbiology, 53(12), 3812-3821.
- . Nature Communications, 6(1).
- . Veterinary Microbiology, 178(3-4), 279-282.
- . Nature Communications, 6(1).
- . Journal of Antimicrobial Chemotherapy, 70(8), 2217-2222.
- . Molecular Biology and Evolution, 32(4), 888-895.
- . Veterinary Microbiology, 179(3-4), 341-341.
- . Heredity, 114(1), 48-55.
- . BMC Genomics, 15(1), 1179-1179.
- . Molecular Ecology, 23(21), 5179-5192.
- . Journal of Clinical Microbiology, 52(7), 2380-2385.
- . PLOS ONE, 8(11).
- . Vet Microbiol, 166(3-4), 558-566.
- . J Bacteriol, 195(18), 4264-4273.
- . PLoS Genet, 9(4), e1003456.
- . Infection and Immunity, 81(3), 838-849.
- . Veterinary Research, 44(1), 124-124.
- . Veterinary Research, 44(1), 63-63.
- . Infect Genet Evol, 12(2), 214-226.
- . Microbiology, 157(Pt 10), 2922-2932.
- . Journal of Bacteriology, 193(17), 4540-4540.
- . Journal of Bacteriology, 193(7), 1771-1776.
- . EMBO Rep, 12(2), 123-128.
- . J Bacteriol, 192(21), 5822-5831.
- . PLoS One, 5(1), e8801.
- . Plasmid, 63(1), 46-52.
- . Methods Mol Biol, 465, 419-431.
- . BMC Genomics, 10, 291.
- . PLoS Pathogens, 5(7).
- . Journal of Bacteriology, 190(20), 6881-6893.
- . Nucleic Acids Res, 36(Database issue), D543-D546.
- . PLoS One, 2(4), e352.
- . J Clin Microbiol, 44(12), 4528-4536.
- . Infection and Immunity, 74(10), 5914-5925.
- . Nucleic Acids Res, 34(Database issue), D335-D337.
- . Nucleic Acids Research, 34(1), 1-9.
- . Nucleic Acids Research, 34(1).
- . Journal of Bacteriology, 187(23), 8164-8171.
- . Biochim Biophys Acta, 1745(2), 223-253.
- . J Clin Microbiol, 43(5), 2425-2434.
- . Trends Microbiol, 13(4), 143-149.
- . NUCLEIC ACIDS RESEARCH, 33(1).
- . Infect Immun, 72(12), 7282-7293.
- . Trends Microbiol, 12(11), 476-482.
- . J Bacteriol, 186(11), 3547-3560.
- coliBASE: An online database for Escherichia coli, Shigella and Salmonella comparative genomics. Nucleic Acids Research, 32(DATABASE ISS.).
- . Nucleic Acids Res, 32(Database issue), D296-D299.
- . Curr Opin Microbiol, 6(5), 519-527.
- . Trends Microbiol, 10(12), 556-563.
- . Philosophical Transactions of the Royal Society B: Biological Sciences, 356(1410), 867-876.
- . New Phytologist.
- . PLOS ONE, 12(8), e0181365-e0181365.
- . PLoS ONE, 9(6), e100572-e100572.
- . PLoS ONE, 9(2), e89018-e89018.
- .
- . Frontiers in Microbiology, 6.
- . Bioinformatics.
Chapters
- , The Molecular Epidemiology of Human Viruses (pp. 65-96). Springer US
- , Bacterial Pathogenomics (pp. 21-48). ASM Press
Preprints
- Teaching activities
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Module Coordinator: MBB344 Genomic Science
Level 3 Modules
MBB339 Evolutionary Genetics
MBB344 Genomic Science
MBB360 Project
MBB363 Genetics Data HandlingLevel 2 Modules
MBB267 Genes, Genomes and Chromosomes
Level 1 Modules
MBB165 Practical Molecular Bioscience 1